NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1002571

Scaffold Ga0209348_1002571


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1002571 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8469
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (38.46%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001993Metagenome / Metatranscriptome607Y
F002185Metagenome / Metatranscriptome585Y
F004453Metagenome437Y
F005670Metagenome / Metatranscriptome393Y
F014388Metagenome / Metatranscriptome263N
F018197Metagenome236Y
F049045Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0209348_100257110F005670N/AMKLLTRQEYNLILRSLDYYDTFMTQRDKEIREDLEDKLYYNLYNPKDGVAQTEVNLPALYDIKTEKDLSL
Ga0209348_100257114F001993N/AMNSEELRYKMKHLGVLCPNRSVANDEQFHELYSKFKDVIEDTEYNIDIVDCLTALHYAMEDFDMYE
Ga0209348_100257116F014388AGGAGMSSLHHEEILEDCFEVASESFRINNKLTHEQLHELITISKGTYDAICNNAYKLFQDRCI
Ga0209348_100257117F004453N/AMLIDFTEYELETIANAMEDYIQYDDEKLDTELLFGGLSVADRVTSINNKIDSVLYN
Ga0209348_100257122F049045N/AMLPIRLGGSLMTVSELKEYLSKFNDDEKITFYFLKDNVLTNCQLEDVNSYGMGIEFTIQDTSEYFEEAV
Ga0209348_10025716F002185AGGAGMVKGKLERKYRLIHNGRELSQGLLSEAGKYDAMQILVQRFDEGRPDAIDPDEVEVIDVTQEKK
Ga0209348_10025719F018197N/AMNNKLLEETNIKEWTNMPPISEELYNELVKEFNNERLYFFNDSYNLED
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Institute for Fundamental Biomedical Research
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