Scaffold Ga0209348_1002564

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1002564
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8481
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (52.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001993	Metagenome / Metatranscriptome	607	Y
F004453	Metagenome	437	Y
F005670	Metagenome / Metatranscriptome	393	Y
F023880	Metagenome / Metatranscriptome	208	Y
F095621	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_10025641	F023880	N/A	MKTDHTYAAQMELTNVPEDSLKQWTNMPPISEELYDELVKEFNNERHYFFNDSYNLED
Ga0209348_10025642	F005670	N/A	MQLLTRQEYNLILRSLDKYDVFMTKRDKEIREDLEDKLYYNLYNPKDGVAQTNVDLSHLYNIKTEKDLSEDNKVKSLNFRS
Ga0209348_100256424	F095621	N/A	MDKTKEECITQIENYYCQRLTELVDMKKHDDAHSIFEEFSLGDDESYQWLFIQFEDDDSETLSIEEETNR
Ga0209348_10025646	F001993	N/A	MNAKQLRYKMQNLDSLCPNRSVTNDSEFHELYSKLRDLIEDTEYNIDIVDLYTALHCAMEDFEMYE
Ga0209348_10025648	F004453	N/A	MLIDFTEYELETIANAMEDYIQYDDEKLDTDLLFGGLSVADRVTSINNKIDSILYN