NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209348_1002445

Scaffold Ga0209348_1002445


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1002445 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8766
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (75.76%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016820Metagenome244Y
F038719Metagenome165Y
F073646Metagenome120Y
F099447Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209348_100244519F038719AGGAGMDSKTREKILHRCEILRYMGDDGIPCIFDELPDDQLMEDCGWVLDKAHDDLDNFQFGLTRKIINKAAARSAKDMWS
Ga0209348_10024452F016820N/AMTKKEFSYIVFSSCGDNVQEIVGVYKDLDGASYGARSALSTLFPKHGDEAKIIRCEIISTEEAKIEYEKTKPKDIFEKCEDGFCPMPTPQTQKVL
Ga0209348_10024454F099447GGAGGMPKKDADKIINHCFSDLIKWTYDDAVFQLTEIFSFTDQECEQLLKEYDILSATTEEVIMNPAPNFNATAPRDVKDLAENLWQARKHISDAKKLISATALTPDDYDNQKAFQEAVVQRANVNFHFISITKYIDEMSEYTKGYVPPLKR
Ga0209348_10024455F073646AGGAGGMLQSEYLELAIELYDIYLANNKHPKKWLPIVELEKCKRGPGLIAKIKKKKGKFSELQPVFVDYVNTQNQYRSCNTPQQWSCKFDYWLQDEYEFTKEELDELRSDRGRQSRRETSQEVTI

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