Scaffold Ga0209348_1002445

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1002445
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8766
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (75.76%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016820	Metagenome	244	Y
F038719	Metagenome	165	Y
F073646	Metagenome	120	Y
F099447	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100244519	F038719	AGGAG	MDSKTREKILHRCEILRYMGDDGIPCIFDELPDDQLMEDCGWVLDKAHDDLDNFQFGLTRKIINKAAARSAKDMWS
Ga0209348_10024452	F016820	N/A	MTKKEFSYIVFSSCGDNVQEIVGVYKDLDGASYGARSALSTLFPKHGDEAKIIRCEIISTEEAKIEYEKTKPKDIFEKCEDGFCPMPTPQTQKVL
Ga0209348_10024454	F099447	GGAGG	MPKKDADKIINHCFSDLIKWTYDDAVFQLTEIFSFTDQECEQLLKEYDILSATTEEVIMNPAPNFNATAPRDVKDLAENLWQARKHISDAKKLISATALTPDDYDNQKAFQEAVVQRANVNFHFISITKYIDEMSEYTKGYVPPLKR
Ga0209348_10024455	F073646	AGGAGG	MLQSEYLELAIELYDIYLANNKHPKKWLPIVELEKCKRGPGLIAKIKKKKGKFSELQPVFVDYVNTQNQYRSCNTPQQWSCKFDYWLQDEYEFTKEELDELRSDRGRQSRRETSQEVTI