NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209348_1001805

Scaffold Ga0209348_1001805


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1001805 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10279
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (35.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Greenvirus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006793Metagenome364Y
F012584Metagenome279Y
F016820Metagenome244Y
F037769Metagenome167N
F047122Metagenome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0209348_10018054F037769AGGAMNYVQTQTDKEDEKLLKKLLSEKIPEKDAKKIINNVFSDLIKWTYEDVVLHLTQVFNFTEQESNQLIKDYDIISFATTKAVIMNPAPNFNATAPNDVKDYSANLWQARKCLSDANKLINATALTPKDYPNQSDFQDAVLHRLHLQEHFVSINKYIDEHLDFAKHYIPPQTP
Ga0209348_10018055F012584N/AMKLRPYLPENTFILSEDSLPKEHHTDRFGKIMVFRKDVGWSVIPLTDAVQFLAMKHTHWTFTPDTPYD
Ga0209348_10018056F016820N/AMIKKEFSYIVFSNSGENVQEIHGVYKDLEGATYGARSALSTLFPKHGDEAKIIRCEIISTEEAKKQCEDSKPKDLFEKADCEDGYCPLPTQQVS
Ga0209348_10018057F006793N/AMTNYRSTNEEKEQRINEAADELAKGKRAMDVSKKLAKKYSVSIQQAREYVRLAKPVLTESISPNDRAYIFSKVMSCLEQDRLDARKDENLKDQTKSTAGMVKMVSLLTSIDQVGCWDDSYNSHLFKNFSEAKKRVKHGDLDALDGETPEGEIPF
Ga0209348_10018059F047122GAGGVKCPKCNKKAIASATRFIEYLHAQRRIRTCECGFKFITYERIEENKQDFGQHSKQKKKEYYRKVLKELINDLEGKTYLEKPKDSKIWEGV

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.