Scaffold Ga0209348_1001764

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1001764
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10395
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (59.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025520	Metagenome	201	Y
F036270	Metagenome	170	Y
F089953	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_10017641	F036270	GGAGG	MYIENTHKQAEFRGDPDGHKLLELIDLMGFDYDRFSSSGQQTYDQICTILATVKEVKDES
Ga0209348_100176410	F025520	N/A	MTFDEKFYVISSTSYIKNVPQTLCTEFLKELKNADDTLKPHISDLETNLISYGFPAIKCTIPTCFIEIVYKHDGDTYLITRQVFLYEEDYPTLKDLEAYKEKVSYGFASQVTQETKDILEAFHNGYGCECLSSGDY
Ga0209348_10017644	F089953	GGAGG	MEDLINEQILENIYEGYEIYKVTLDVLVEDLNGRVQNVPDYEDEVIKYAIRERSCFADQDLKLVRHNDMSFFPTLEDAKQALDEIVQKRFEEQAQ