Scaffold Ga0209348

Basic Information
Taxon OID	3300025127 Open in IMG/M
Scaffold ID	Ga0209348_1001490 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025127 Open in IMG/M

Scaffold ID

Ga0209348_1001490 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11349
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (77.78%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

11349

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (77.78%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

18.92

Long. (^o)

-108.7999

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005816	Metagenome / Metatranscriptome	389	N
F009521	Metagenome / Metatranscriptome	316	Y
F019728	Metagenome	228	Y
F022856	Metagenome	212	Y
F035770	Metagenome	171	Y
F055270	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100149010	F005816	AGGAG	MDLTNFNVDASNEGKSVVEPGRHVLHWQGEEEELIQGRNGWRGCKMYFEIDGAGIRLNHTFTVGHDNPKYVDSGVKSMLLMAQAMGLKEPPKDTSTAFMGKSVSAELIKDENGYLKINEDWGRTWQATNVKPEPVNDNIKTGPSQADLDSVGSMDASDDDVPF
Ga0209348_100149014	F022856	GGA	MSVGNFRDILGKERDKLYPQMPNTREGDSHISIHIHMYKRANPLRGFDSLGGSARTQGER
Ga0209348_100149020	F035770	AGGAGG	MKRYKPITYAIAEYQYACHLRDNGHTGEIIYPDKASSKQQTDGSWLLLTITGKKLGTVSPNGTVRLT
Ga0209348_100149022	F019728	N/A	MITKKELEKNNWNVIPEGVWFGVDYAESHKVNVLDVLTDLLDLDTNVEGYNFVVCAYKKEGGNDE
Ga0209348_100149025	F009521	GAGG	MKYQIIINNGTLKGFIAFKGSCLATMQDKYKRLEQQGHKLKLIRGKQ
Ga0209348_100149026	F055270	AGGTGG	MIIKEYQKEYKYYDKNANSVDMVNYIKTVMANNFIEEIYSLCLDYPEQFKQALNEIKYLYSKELNSFVYPPNDFVKYKQGKEQLLEVA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209348_1001490

Overview

Ecosystem & Geography

Associated Families

Sequences