Scaffold Ga0209348_1001429

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1001429
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11610
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (51.52%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014114	Metagenome	265	Y
F034139	Metagenome	175	Y
F039181	Metagenome	164	N
F056669	Metagenome	137	Y
F101298	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100142917	F101298	AGGAG	MDRDFQKVLQALTAFDKKLSLLEDVVKQLAEANVNYATSQQELNKEQSALNKDLGEGIKMLGDNLAEVIKFLQKIGGNN
Ga0209348_100142919	F056669	N/A	MSLIKSYILSIEEMGYDAYNLNKLSSKEWDNLLTKALRSDKKLYETLILTRCKLKLEKDRAI
Ga0209348_100142920	F014114	GAG	MKEYKATDPEMVQAQKDLAKMSNLSDRVITNDDDLFQELSTIQRKLCQISEFKSHFLQRYEDILDEQHRLETQLCVFQNEMLHSFELCFRYYKTKKKGFK
Ga0209348_10014294	F039181	AGGAGG	MPKGKYYEYQIKRSALDNDYLSGNIDDFQYMRESLDLDLEYEPYILAQTINSEVAKKQHGIDDAKQQLD
Ga0209348_10014297	F034139	GGAGG	MKLEEIYETLKDFAEKEEDLQCKWPCDSDYNVPTWDKIYDALDILDSIINYQPSDAELEAYFNDYQDPPHVRNQKMLEMKTESHGRRFV