Scaffold Ga0209348_1001253

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1001253
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12423
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (56.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014114	Metagenome	265	Y
F034139	Metagenome	175	Y
F056669	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100125311	F034139	GGAG	MRLDSIHIILKEYIAEQEKLQCRWPCDAEYNVPTWDNIYDAVEAIESIINYEPSDAELEAYNDSYSEPLHVKNQRMLEMKSESHGRRFV
Ga0209348_100125318	F056669	N/A	MSLIKSYILSIEQMGYDAYNLNKLSSEEWDNLLTKALKSDKKLYETLILTRCKLKLEKNRAI
Ga0209348_100125319	F014114	AGGAG	MKKYKATDPEMVQAQKDLAKMSNLSDRVITNDQDLFKELATIQKKLCQISEMKSYFLQRYEDILDEQHNLETRLCIFQNEMLHSFELCFRYYKTKKKGFK