Scaffold Ga0209348_1000998

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1000998
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14188
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (94.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025990	Metagenome / Metatranscriptome	199	Y
F043915	Metagenome / Metatranscriptome	155	N
F069472	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100099818	F069472	AGGAG	MSDFYSYDEDVTDDNDTLDPFDLMIRDLVDYKLNACSVQELLAMAASWMTQDLENRTITEVQELHDGLFAAQELH
Ga0209348_10009985	F043915	GGAG	VSNVINLMPTEATANEVLEECKGDFEHVLVIGWTPQKQLTAKSTTSMDMKEIIYLIEVFKQAIIMAGHEVE
Ga0209348_10009987	F025990	AGG	MTQHPVYRAQFYIQELKKYATWPEYLAYYREQDDKIMQFSHYCMQMWSSYMNDKIKQKEAPLSYKQYLNKYKDLLEEGYNDRPED