Scaffold Ga0209348_1000954

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1000954
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14498
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009993	Metagenome / Metatranscriptome	310	Y
F012718	Metagenome	278	Y
F013946	Metagenome	267	Y
F034713	Metagenome	174	Y
F050398	Metagenome / Metatranscriptome	145	N
F059991	Metagenome / Metatranscriptome	133	N
F074141	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100095411	F009993	N/A	MPRLIKYTTSGFVDNVPDQALAVIEHASLFYLVDQRFKGMNKYIAFAVAGAGYEIFIDNLKQQSAPEGFSASKK
Ga0209348_100095420	F050398	N/A	MPILNFTIRSQDIDNKELANDTTAPAKKTIRLEQHLKLKYLKLLHIYHNLDNSNISDGDGTSNNTILFAKISFLNGKNSVFFEYNNGQIIEHAGMICLGETIKDENSSVFKDLYKVLHDGKQLLYLNQPFSVELFKLVAVDPAVDNTDISVYNATNSHKIEPITIPEFRGDLAGPGQYVSFTFEYQEDTTK
Ga0209348_10009543	F013946	N/A	MDTQTIIDSLLRGVMIAGVNRAVFERKPVFSMGTVNQGFRLGAASVGYDLVVRPTVQKVLPQLPLPNGR
Ga0209348_10009544	F012718	N/A	MSELLQFDLTDIPDNPSIVLAGRRRAGKGVLTKDLCYNFFRGKIKNVFLFSPTSEIAANGFDFVPYEFRYNEVEVDTIERIMKRQEYLIRNNPKGNHRILLIIDDIIATNDNKQQKILDKLFICARHYQISLIVCYQYIKKDFSPVQRDNVDIIFCFQQSNFDNKDALNKQYLSINDNKKDGLDLINKYAVGYQTLTILNTTNSDKFEDFCFFYEADIINKKFKLGQEYE
Ga0209348_10009545	F034713	N/A	MVLLTFSFTGENTTGQATFTTTKEYKFKNLYLEDVKYNIFNEKLENSIDKSTSGAGLGSVSTTITSPLGIHMDFLDQADCVLYSLGDGSGETLNTAQNINGLIPIGYAGKVGSQPVSTRNTMSHSYPYKLISNRPQTWASGKSLVFNLYFRDVMTDGIIKDWALMSGTTDAFSDINSISITLRLE
Ga0209348_10009546	F074141	N/A	MSDDLIDFKDTHYAKKNKMLCIYCSYKSAVPSKNNQFCSEICRLLHLSVSKELNVEDIGKLIKLSKIDLIHIILNLKCQNISIEGLHKILDKPYEYKQKMLVKNQGSFKLDFS
Ga0209348_10009548	F059991	N/A	MSNPQLIHRANENSSLFNTVKARNSKQNVFDYVNEGELNVCAYAKSRIIVNPTTSLNGDGGQTIKFELPNFGLLADMYLQTEFARGDTNADTGNKDCFLVDMAGAFTFSKIRVVYNGNTVFETTPEHLVASLYARANREQSLVLDGMLGSGIIGASDDTHGNLEGRKAMASSFGGQKLSCPLKCWFSESVGRNFDLYSLSSKCFLEVDYRPILDVHGKAETTADRITYAGSNLICYLNELSPQELAAYQSRNYAPNSVSSQLGYTTTLLSESVASPVLATATTKGNTIKINSISGLVRRMYVFATIDSDRSSTSDKKYMNLVDISSVKLSANNQTIYEIQDCGIGIDNVNRSSGNGYQTDQFVEMYHNKLTGPCNSAVGSDTYKLMDIGVDKSVGKTTGDQFDFARVKVINFGMNPDDYSSADGSLALSQVNVPELEVKFPTGTSGAHTVHVVAELITLNTYNVSATGQINFKSISE