Scaffold Ga0209348_1000885

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1000885
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15071
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (86.36%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025173	Metagenome / Metatranscriptome	203	Y
F034392	Metagenome / Metatranscriptome	175	Y
F043141	Metagenome	157	N
F098071	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100088514	F025173	GAG	MANGYQMFAKLHPPGSLYRYKDRFPDDGWKFGKVYLLTKWEVPEGISEKSPLLNAFFLVDGKERCVDISFFRYLEQVE
Ga0209348_10008852	F034392	GAG	MAKIDKLKEGDLIIHRGSKKPYIVLEIKRRRKKSYGAGPSGSNRKNFLLLATNGRQMWQVDTALKVEYYLPGDPWFDDIR
Ga0209348_100088520	F043141	AGGAG	MHIDCAICEESFDLRSPEKKRAGGLRNHCPDCAEETTVPYLAVNGADGKMAGLTILAFESAEDREKYKKAWHNNTGMNKGKSCHLSTSNTPMTGMKFRRVGENFGNSNHKGKL
Ga0209348_100088537	F098071	GAGG	MSVYIVTATLMDDDYKRPCSSSQTAMATSYEDAVVHAVGFYLDYLSDWLTIAFDYHNPSGLNNVIEQHRNDPRTLFSALLDYFESNPEGMFTGEFVPETLSVTIEENEHAPLDIKPVLSTIDEIVRYIKEEREEA