Scaffold Ga0209348_1000636

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1000636
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17959
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (90.32%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F006867	Metagenome / Metatranscriptome	363	Y
F021674	Metagenome	218	Y
F069451	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100063615	F006383	GGAGG	MLIKDKMWKVQQPGTILRARHSARRGQLALVLTKAYHEVRGTGTRGNHYVKMQMISTGERIEESLTNANNCWDIVSEP
Ga0209348_100063616	F021674	GAGG	MERETYNSRLKSNPEDIPLGSLLRVKKHCRKNNIVKENGELAILVERDGGKYISHDVLYPTGRRTVFIPMNWEVVSYANQG
Ga0209348_100063617	F069451	GGAGG	VKPGDLVRIRKSAITAYSTLWFIDLADNKAPLLLMEQLNRRHWKVMKPDGNTFFVEEQNLTKRMW
Ga0209348_100063619	F006867	AGGAG	MLQDKEQRKLHKSIQNRCRIQPGMLVKSSHKDVIDKLALVVKVSPACSFDRDYEGAEEHIFYVCEPFDGSPSFVDYVCNLEQVS