NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209348_1000607

Scaffold Ga0209348_1000607


Overview

Basic Information
Taxon OID3300025127 Open in IMG/M
Scaffold IDGa0209348_1000607 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18342
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (69.77%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006793Metagenome364Y
F038719Metagenome165Y
F071303Metagenome122N
F073646Metagenome120Y
F074765Metagenome119Y
F078604Metagenome116Y
F090494Metagenome108N
F099447Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209348_10006071F006793GAGMTTNRSTNEQIQERVNFAADELAKGKRAMDISKKLASKYNVSIQQARDYVRQAKPILTQSISPNDRAFIFSKVMSCLEQDRLDARKEENLKEQTRSTGGMVKMVSLLTSIDQVGSWDSAREAEGDYLFRNFSEVARKRKKYGDLDSLDNTTDSETP
Ga0209348_100060717F038719AGGAGMDSKTREKILHRCEILRYMGDDGISCIFDELPDDQLMEDCGWVLDKAHDDLDNFQFGLTRKIINKAAARSANDMWS
Ga0209348_100060719F074765AGGMTKTATPKQTKITVSKLSHRLSRNGWISYNCELRKGRTTLAAVDQEGVGGDERVDWNNTEHYLLIHHWILDTQRDFWREYEVENINYMVELGHKTMKDSIKEKLDLMKKFNLWEKLAKKKPKSWKEARTIQQQLDFHDDMVGAWTTVYVENKLADKYYD
Ga0209348_100060732F078604N/AMSNDFYIISTNATIKSTPTKLDKAFKKELVTNNGDLKPHVEKIIDNVFYYGKQCINATIPTLFIEIEYKDSNKDIYLISKEVFLYSEDMPTLKDLENYKSKFDFNFSSQVEPEVYELVEAFHLGYGCMCLSSEGY
Ga0209348_100060733F090494AGGMSTKHTETFKNFQTKHNLSYSNFFTFTNPKVLKNEKVSEIPTAILMLMNTPKACPAAGSCREVCLITSGNPIYLDNKIKCRIRRNNAFMSDYSIFLRYLVVNCFRHYAKHRGTDKVGFRLNGVSDYAWEDFSVKLTAEDTDYIKKAFNIYIEPIRYGSVIEAVQKAIDLNNNELLKNSVQFYDYSKRIDRDFKKIKALNYHITLSHGSKEDTFSKALELGLNYAAAFNLKKSQDLPKQFTYKGIKLNVIDGDITDYRPLDNNNKTNIVGLHFKIVVNKDNAKKLDFCIA
Ga0209348_100060736F071303N/AMVKLVNLNRRLKTPADKAAFQGKNPSNKTTGPNTAGGLQDPWRGTLDNNPLNDDFYQSSYTFSGEAPEVQKKLDGLQFEYGNAFEEGNNEFAANFLSKYSRTLGGTDSAEDKGLIEEDRIVRPENLSQIATQPAASGNAIQDPNVAGKFPSQEVNV
Ga0209348_10006074F099447GGAGGMPKKDADKIISHCFSDLIKWTYDDAVFQLTEIFSFTDQECEQLLKEYDILSATTEEVIMNPAPNFNATAPRDVKDLAENLWQARKHISDAKKLISATALTPDDYDNQKAFQEAVVQRANVNFHFISITKYIDEMSEYTKGYVPPLKR
Ga0209348_10006075F073646AGGAGGMLQSEYLELAIELYDIYLANNKHPKKWLPIVELEKCKRGPGFWAKLKKMKGLYSELKPVFVDYVNRQSQYRSCNTPQQWSCKFDYWLQDEYEFTKEELDELRSDRGRQKGRETSQEVTI

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.