Scaffold Ga0209348_1000534

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1000534
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19598
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (55.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F003020	Metagenome / Metatranscriptome	513	Y
F009812	Metagenome	312	Y
F011410	Metagenome	291	Y
F046013	Metagenome	152	Y
F052656	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_10005343	F003020	GAGG	MPDISKFKSVSVSTDTHAKLLGLAENRFEVPVSVQKVIEFLLEKELKKKNGRSNGKSRS
Ga0209348_100053439	F046013	AGG	MDIHQIYIRDSEAAFENAIKKGHGHVKDTHMYMYTKYGNGKPYDVFKHIMTRRHETVEVEPDA
Ga0209348_100053440	F052656	N/A	NSDIGKELSIVSEQTKTRLSQAMNNIKLDDKEPTVAVVASGGFSLVN
Ga0209348_10005347	F011410	AGCAGG	MKDFKFKLEWYISDLLVWIVFTISIGLMIASIVTMYNMYNVIETMWLEIQQVKETNISLYQFIEGHRNDFD
Ga0209348_10005348	F000720	AGG	MTLIKENRGVRKEIPDRMMSATFALPIDERRVVGILDYVASDTGVTPMAFWIKLKPTDSYLDRELRASGKLISRCLQHGESLKDLVDTLSQDNVIGQMANYLHKNMEDIILGKQPEKKQRMLSTDPYAMKE
Ga0209348_10005349	F009812	N/A	MMDEFELEIDWIPEDTGAPYEADDVFPNTPPHTIDKICKSKFGHTNWARMGSMTPEELLGNPCEFDYEKGIIYFKNSSLI