Scaffold Ga0209348_1000460

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1000460
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21515
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (60.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006793	Metagenome	364	Y
F012584	Metagenome	279	Y
F074765	Metagenome	119	Y
F087049	Metagenome	110	Y
F087060	Metagenome	110	N
F090494	Metagenome	108	N
F092069	Metagenome	107	Y
F092196	Metagenome	107	N
F099447	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100046015	F074765	GGAG	MPKTLTPKETKITVSKLQHMLSYRGWISYNCELRKGRTCLAAVSQEGNGGDERVAWNNIDHYLLLHHWILDTQMDFWREYEVDGINGQVELGYKTFKDGIKEKLELRKKYNLWEKLAKKKPQRWPDARKIQEQLGFFDDMVGAWTTVYVENKLGDKYYD
Ga0209348_100046019	F092196	GGAG	MKTYRIKVKQVYIETVFAEAESKEDAIQMVWSDDCRLEGSEYKSAEADIQSLEEV
Ga0209348_10004602	F090494	AGG	MSTKHTQTFKNFQIKHNLSYQNFFTFSNPKVLKNEKISEIPTAILMLMNTPKACPAAGSCREVCLITSGNPIYLDNKIKCRIRRNNAFMSDYSIFLRYLVVNCFRHYAKHRGTDKVGFRLNGVSDYAWEDLSVKLTSEDTDYIKKAFNIYIEPIRYGSVIEAVQKAIDLNDNKLIRNSVQFYDYSKRIDRNFSKIKALNYHITLSHGSKHDTFSKALELGLNYAAAFNLKKSQDLPTTFTYRGKSYKVTDGDITDARFMDDNKTTNIVGLRFKIVVNKDNAKKLDFCIA
Ga0209348_100046025	F087060	N/A	MYTLLLLKSMTKSQTKSNETSAKQVLRNIIGSTKRTVVTGDAPKTKKFDPVADQDDRLMKMVDLSLVIKDKKNEYDDLRKSFENDLKAALEDSEENPKIRHSENHRVHVYLSKRRVYKYSEKLTAKRLKLEAQLADLKDEEAKEVRHGKATLTKQTLTVSFKS
Ga0209348_100046026	F092069	N/A	MTTVIFEYNGKSKEIPINEIKSVNDVADAYAKLGLKSKKSIKKRLSYTLPNGKYHSFLSNKNHKYAVCCDNEETKKGFCYTDDYAEAKTTAANWTNKFNNIDEGYRKFVVVDIQEVK
Ga0209348_100046036	F099447	N/A	MPKKDANKIINHCFSDLIKWTYDDAVFQLTQIFSFTDEECEQLIKENDIVSSSTKEVIMNPEPNFNATAPRDVRDLADNLWQARKHISDAKKLISATALTPDDYDNQKDFQEAVVQRANVNFHFISITKYIDEMSEYTKGHVPPLK
Ga0209348_100046037	F012584	N/A	MKLKPKPYLPEDVYILSDEELPKEIHTDRFGKVMVFRKDIGWTVIPLKEVYTYFKHMKHTHWTFTPDTPYD
Ga0209348_100046039	F006793	AGAAG	MTNTRSNNEQMEERINYAADELAKGKRAMDISKKLASKYSVSIQQARDYVRSAKPVLTDSISPNDRAFIFSKVMSCLEQDRLDARKEENLKEQTRSTGGMVKMVSLLTSIDQVGSWDNAYDQHLFKNFSEVKNKIQHSDLDALDNTDIPF
Ga0209348_10004608	F087049	AGGAG	MNKDLARYINTLLAEKQREVKSKENYLNKIDGGERHFTEYQEIIWEQGMIIKAQRAMDTIIEENI