Scaffold Ga0209348_1000385

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1000385
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23841
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (45.45%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006827	Metagenome	364	Y
F018644	Metagenome	234	Y
F045688	Metagenome	152	Y
F055644	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100038511	F018644	N/A	MEFFKYIFENYKDNILGMTFAYIGIISIFIMFLPKDNIISKLFKEFASILTSLFKK
Ga0209348_100038512	F055644	N/A	MSHEIQYLNNDSDYDWGESISLSNYNYFFVPSIPEWAYGEFDGLLYEGVQYNWDEVDYRLSVEYNSVPEPASVGVIMGLALICIVLFKK
Ga0209348_10003857	F006827	N/A	MSEETINYLVYDTEVDAIARADIEGARRGYAYHNTPDGVSRYHTYPQITADAKYALVVNEYELTDDETAAIVTDVKFLEL
Ga0209348_10003858	F045688	GGA	MEAMTSRVAMGSAGFFACLGLQEINQVVSLIVGCATLIFLGLSIYKLIKEMK