Scaffold Ga0209348_1000384

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1000384
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23843
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (37.29%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006793	Metagenome	364	Y
F012584	Metagenome	279	Y
F018189	Metagenome	236	Y
F024809	Metagenome	204	Y
F037769	Metagenome	167	N
F038719	Metagenome	165	Y
F047122	Metagenome	150	Y
F057382	Metagenome	136	N
F058218	Metagenome	135	N
F058913	Metagenome	134	Y
F080142	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100038411	F024809	AGGAGG	LNYSQKVLFNDWINRCPIDGVFVDEPISEVQMEDGRVGYLVKVFLTIDKEDWEQNQSPPGISENSENLPSQNRL
Ga0209348_100038415	F057382	N/A	MSKNDLTKAELKQLISTIVFFQLGARTKELKKIKTKLKNQLKEMEES
Ga0209348_100038417	F037769	AGGAG	MPYVQTQTDKEDEKLLRRLLSEKMPEKDADKIISNVFSDLIKWTYEDVVLHLTQVFNFTEQESDQLINDYDIISSATTTEVTMNPAPNFNATAPNDVRDYSANLWQARKCLSDANKLINATALTPRDYDNQDDFQDALLQRLHLAEHFVSINKYIDQHLDFAKHYTPQQKP
Ga0209348_100038418	F012584	N/A	MKLKPYLPEDVFIMEDENLPKEHHTDRFGKVMVFKKDLGWSVVVLKDVYTYFKHMKHTHWTYTPDTPHD
Ga0209348_100038420	F006793	N/A	MTNTRSNNEEMEQRINYAADELAKGKRAMDISKKLAKKYSVSIQQARDYVRQAKPILTASIAPNDRAFIFSKVMSCLEQDRLDARDQENLKEQGKATGGMVKMVGMLTSIDQVGSWDDAYNNHLFKNFSEAKKRVKHSDLDALDGETPEGEIPF
Ga0209348_100038422	F047122	GAGG	VKCPKCGKKAKASATKFIEYSHAQRRIRTCECGFKFITYERIEQDKQDFGQHSKQKKKEYYRKVLAELIDDLEGRTYLEKQKDSTIWEGV
Ga0209348_10003844	F058913	AGGAGG	MKLTKEEARWLDDKWNDFYYYFDVESMYQKDQEIFRKIGQKLSEVKQ
Ga0209348_10003845	F080142	GGAGG	MKVGAGEFIKTNSGEIIWGSEAFIDEVFKTLYGNEFRNEIWSYNDALHKIKNLVQLQEQN
Ga0209348_100038456	F058218	N/A	MFSKQYRQRYKDALKLQRWPLVDTAKMEKEKKEKDRQARLKRLYGLSDDKLKT
Ga0209348_10003848	F018189	GGAG	MELSKEQMEKVILELESNYNSKIFDDENLVEIINLFKKYLNSGETK
Ga0209348_10003849	F038719	AGGAGG	MDLKTREKILHRCEILRYMGDDGIPCIFDQLNDEELMEDCGWVLDKAHDDLDQYQFGVTKKIMNDASKRQSNDMWG