Scaffold Ga0209348_1000316

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1000316
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26726
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (65.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005018	Metagenome / Metatranscriptome	415	Y
F020096	Metagenome	226	N
F030117	Metagenome	186	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100031647	F030117	GAG	MITEKQVQEALDWMIQNEDALAEAKAAYHDLDRFSKTIKAELMSKISSNMSVAARETEALANEEYKTHLDNLRIAEEQYLRYEYKMDHNKLICQLWQTISANKRQSL
Ga0209348_100031654	F020096	GAG	MSNVARMEIPNRMRSTNVRMLIDDMPIVATMDYILSSTGITPVAVWVKTKKSESTLDRELRSSGKAVSLLLQYGCSIKEVSETFTRDSIIGSVVWYLYKNLEDILQGNQPDKLPKLSTQPSGYTIK
Ga0209348_100031660	F005018	AGGAGG	MAITKTWVSAIPKKNADGNVTEWTVEYKYTDGDFSHTFKKTEKIETPSKTPDKYTKAELLTLMDEAHWDDMFAKKHNIYKNPPVADTVDVSFDINTLSDN