Scaffold Ga0209348_1000229

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1000229
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31075
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (60.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007801	Metagenome / Metatranscriptome	344	Y
F025768	Metagenome / Metatranscriptome	200	Y
F087050	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_10002292	F025768	GGAGG	MISFIKKILGISDLEYKVRLLQRQNYWRDKYKVRIXKKQKQK
Ga0209348_100022937	F007801	AGGAG	MAIHDLTKKTRASTGQKIIPLGPVDNTMRVIKLEKRLDDQEQKLDKILNLLQHGNNLPNTHKQST
Ga0209348_100022941	F087050	AGG	MAIVDMKSTVAKDQNTMTGKINESPKKLNAPNLSGMNKLFERKQPASAPMEEEAPMQDTTQMPTNDLIAKVQNLPDEDKAVLSAVLSPSVSNVLVQLAPELAPLVEAAGPKEENVIIPVSMFKSFATKRYSGDETQAVQSLITDMSGTEMGQSTVPPDTQMAETEESGMEQEFNTIDTEGELA