Scaffold Ga0209348_1000213

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1000213
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32042
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (88.46%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021207	Metagenome	220	Y
F029779	Metagenome	187	Y
F078603	Metagenome	116	Y
F095588	Metagenome	105	Y
F105326	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100021337	F095588	AGGAGG	MKYKVEIELDFNKRPSKKNVLDKLFDMLRDNKVNYKLHKYNNSLYKRIERSIKNDRHN
Ga0209348_100021340	F029779	GGAGG	MDYEKKYKQLCEALVGVDATERYSHEDIISYVFNLKKTEEKYYDSKKT
Ga0209348_100021343	F105326	AGGA	MGQERNLTPTQHWELHQGLWHMLGCDMQLKYKDKTTAIYVDNKAKLKYTYSTKGFIKWFVIPREEKKDANKTN
Ga0209348_100021344	F021207	AGGAG	MSKRFKQVNVQHFATLVQEIDVSKYSQKEYVEIVEELYMSIFRHNTSGDFVVETLPNEKGNWKVHKPSATKEEVMELIKKGQVIWDKNVI
Ga0209348_100021352	F078603	AGGAG	MKRNNLDIAMLLTDAILNEFEKNGKVNIPLDEHKYSFPLQDRIQIELEKIKGE