Scaffold Ga0209348_1000202

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1000202
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33869
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (77.59%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002281	Metagenome / Metatranscriptome	575	Y
F002928	Metagenome	520	Y
F058444	Metagenome / Metatranscriptome	135	Y
F089521	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100020242	F002928	GAG	MKNYLVKFKCIIGDYEHTDYYIFNKRKSEWGYCKEFWGISKRDTSCLKEGAFWNDQMDSAISVYSEQEITEQEAYVLTRLGVA
Ga0209348_100020250	F089521	AGG	MKYIIINKWQLKDSKCQPHYYLKEVVDTLEIANAKLKAYQIIETDKNDNYFIVPFNENALLLTEEVA
Ga0209348_100020252	F058444	AGGAG	MTLKKLLEQLNSIPKKHLNTDVRVSVDALIDRGITENFWFTDVEVREPSSGLDKPEIIISGSE
Ga0209348_100020254	F002281	GGTGG	MKMNYPKIAEHLGVKLRGDETFDELLKIEQQVKEHKERQARIAEENANIQRVDAQVKGVKKW