Scaffold Ga0209348

Basic Information
Taxon OID	3300025127 Open in IMG/M
Scaffold ID	Ga0209348_1000201 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025127 Open in IMG/M

Scaffold ID

Ga0209348_1000201 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	33901
Total Scaffold Genes	64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	41 (64.06%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

33901

Total Scaffold Genes

64 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

41 (64.06%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

18.92

Long. (^o)

-108.7999

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000993	Metagenome / Metatranscriptome	811	Y
F001650	Metagenome	657	Y
F002928	Metagenome	520	Y
F003021	Metagenome	513	Y
F006282	Metagenome / Metatranscriptome	377	Y
F036268	Metagenome	170	Y
F041492	Metagenome	160	Y
F087768	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100020128	F001650	N/A	MAKTLIILVLLFDGTLIQEKYNLSRPIEVHECLSMANEHRNEISHYREFDDPIRNGWYLNDGRGTIQGFICE
Ga0209348_100020133	F003021	GAG	MLSLNHCSSTDIINISAGIYTGMEDKPNPISAIKILTKDKDARPPVE
Ga0209348_100020147	F041492	N/A	MKARLLEKEDLLKMVEPHHLNEFKKWKVKDLRNHFNLTHKINGKYENKKGYCFKCLKPLRPDYTVFENYCLDC
Ga0209348_100020153	F002928	N/A	MKNYLVKFKCVSGEHEYTDYYIFNKKKSEWGYCKEFWGINKRDSNCLKDNMFWDDWMQNAISVYSETEITNQEADTLQRLGVA
Ga0209348_100020154	F006282	GAGG	MKNNETLKNRLAELSKQNTLLADHLASMCCQADEDTPSKYRTEHFRSTMDDAYEYLEKINYFKRDK
Ga0209348_100020155	F036268	AGAAGG	MKNNCQDCDGLGYFTDVISTGLSDPNDPYHEPHTERCDTCMIFDSDIEADNFLKQQASKQRG
Ga0209348_100020159	F000993	AGGA	MTKLHQTEYKKNYKNYILSTIEEDGEEKPLKTDQEKINYIFDKFYSEYGFMVERVGKQKAIAEWLGGLALNIVYSYDDIVNLAVKMGSIDPNPSDKLRSEVEQNYWLFMANIILSFEPKN
Ga0209348_100020160	F087768	AGGAG	MKTKKQFNLYTFTIGKFCSTETDSIEQAISNFNQRLNLDHNGYHHPNMKYNFDPIRIITEQKVNDEIELDRCNSETILKFNMNKLNHLILK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209348_1000201

Overview

Ecosystem & Geography

Associated Families

Sequences