Scaffold Ga0209348_1000157

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1000157
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39880
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (78.57%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001523	Metagenome / Metatranscriptome	678	Y
F003364	Metagenome / Metatranscriptome	491	Y
F005178	Metagenome / Metatranscriptome	409	Y
F010471	Metagenome	303	Y
F021206	Metagenome	220	Y
F044198	Metagenome	155	N
F062259	Metagenome	131	N
F096197	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100015719	F044198	AGGAG	MQPKNVPVHVRIKVEPTVKQRGRPCRLHGKDFNSIADAARYFNENYSWAAEQVQKGMNRESFPKKYKVKKDELLAL
Ga0209348_100015722	F005178	GGAGG	MYILVWMQLFSTQSVEHYQLGNYATLEECQIELSKAAKMITHKSETVACLEVDVQQ
Ga0209348_100015730	F062259	AGGAG	MKTERELDSEVREAFDRAIDAIMFDYTYIGTFERYRDKLEYMGFKHIETGDSIKIPKCGVAFRKKKETENA
Ga0209348_100015735	F096197	AGAAGG	MTNFTKEQLKTLRNEINSLLVTHDFEETCDLKIQTLVDSCTYRGGEATFKVKVLLDGAETKEEKDLKKMAILHRLDTSKVHEYIDHRSVRYRMQLVGYKTKARKMPWIVKDCLSMSGNEYKLTDAQARQWFEYEVQP
Ga0209348_100015737	F010471	AGGAG	MIQLTLATNNKAHPEYSDNQIAQALGLLPLWVAEHIGNDDDTDLVQFMEDRYGFGKLYKFEGTINKNGDYVSKDDTDLPYMGRMITKHGYAYFYEYAIVALPQPDGTHFITRMD
Ga0209348_100015739	F021206	AGAAGG	MTTVTFNQLLEMENVLATRKIPSDISAMAKAKRYSESKQKVITLGDQPLHYVLRILAKEGLDK
Ga0209348_100015753	F001523	AGGA	MNKIEIAVIAAWVGLAAMMATTASYAKDFSVAGQTVSIGASSDLNYTTGVEDWEWELTPSAGLSAMGLGFTMATDIDMLELEDGDIFQGLDFTVDYTIPSTNISLYTEVSTDSDLEFGDVTVGATVSF
Ga0209348_100015754	F003364	N/A	MWIAFMLLCSTPAALSCEIMAKTAATFPTEEACAQEAIIVARYFQEKGYLAIPDCQEIKMGVSL