Scaffold Ga0209348_1000146

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1000146
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41757
• Total Scaffold Genes: 74
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (71.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003898	Metagenome / Metatranscriptome	463	Y
F025855	Metagenome	200	Y
F054786	Metagenome	139	Y
F086169	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100014630	F086169	AGGAG	MSDKQPDWDKITEGKIRHGVAVAFIEKGQELTPDNMKTMEKWVQFIIHGYHGIKEILDKKEAMTDEELVKEVKDKFNGKVIKETDQEYVEKQIKKAVESLGAKNRNKVLYQLKNGNITIDNLEACLSKIEVMKSA
Ga0209348_100014646	F003898	N/A	MDSLKVTGLSTSLGVVYWTDLLSGVLMCIMFVVQIYYLYLKTKKIKED
Ga0209348_100014665	F025855	AGGAG	MKKCMHCNEDNKEGWFYCKSCGKKASESKFTTNLWMTSDLGKRTDVELSTQSMGDNIQKMRKNLGYAS
Ga0209348_10001467	F054786	N/A	MQSITNKYLKSLFNSISSELIELVNKAEKKPYTTQNNYGAYLPLLTSFKSQLGLDNAVKLLIMAGGNKQGILEAKKILK