Scaffold Ga0209348

Basic Information
Taxon OID	3300025127 Open in IMG/M
Scaffold ID	Ga0209348_1000121 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025127 Open in IMG/M

Scaffold ID

Ga0209348_1000121 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	48224
Total Scaffold Genes	69 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	45 (65.22%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

48224

Total Scaffold Genes

69 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

45 (65.22%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

18.92

Long. (^o)

-108.7999

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002282	Metagenome	575	Y
F022521	Metagenome	214	Y
F033392	Metagenome	177	Y
F069445	Metagenome	124	Y
F087899	Metagenome	110	Y
F091888	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100012117	F087899	AGGA	MATLNELIAQLNASSDRILADANRMNTTADSMNRTLDNQLGVQEVSGVAELLPSGRTVGEQRDQDMYATGQLQYADVLPQDYGYLGSNAQFPEQGLMSQAKNLFDKYIGSGGIIGMAANTIGGMLPQRSALNRYMLDTYGGYGDMGGQDKFGYNIINAANNYMVPGSNSFRSHQLESLRGLDKDLANQFYMDNYGKTYEEVYKDSQKKIDPFNQNIDIGSGADYYGGDEPTGGGSNIGSVISDSYQAVEDDDYGLI
Ga0209348_100012142	F033392	AGG	MKFLLTLFICSGIGNNCLPVTQDMHSYQMNHNTFSGCIKDGLGQSFEVFYNSELITDAQIDKGRLYPKFICAPYTPEQAET
Ga0209348_100012144	F091888	AGGAGG	MKYTLVKRVTFSYEGAEDSVSVIKEANSLEDALKYKVGAEMLEEPADNKKFQVLINIDDAFTYITKQPEKPLLLTDEVKGQKAS
Ga0209348_100012146	F002282	N/A	MMSEADIIEYNKLTEQLELLKKKGAPVDDRGPADLTKRIEILEFRNEKLHKHNERLVEEIRSLRSKLYIKEN
Ga0209348_100012152	F069445	AGGAG	MKKEKGRTFDGITRPSNDRYRKNFNEIFGKKPELDLKGTVFCKAKKCNNHLYKNESASLPGYCVECG
Ga0209348_100012163	F022521	GAG	MALLVHYQNLKHFDADKNQWLGEKGQNAIDLKNQADTLGWLMMSIGVYEISTKTIDEMIFRVKFLDFIHGSSYFVGNPSDTDLRQLFKNHLGLRIAVTNTGLKNISTRHKFMVAQLNSLEEKIMEQINK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209348_1000121

Overview

Ecosystem & Geography

Associated Families

Sequences