Scaffold Ga0209348_1000112

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1000112
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51826
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 62 (81.58%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014376	Metagenome / Metatranscriptome	263	N
F026153	Metagenome	199	N
F026308	Metagenome	198	Y
F046991	Metagenome	150	N
F066154	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100011211	F026308	AGGAG	MDKYFETLDVAAFRMQHMMDSPKAKRLFKHVLDTEHDAGPEADYIIRMWKEARKLDRADA
Ga0209348_100011258	F066154	N/A	MTIKDMSRVEKVDSPTKTIKTTPTTPELVRRTVGGSFRVIKARGQGAATRGFDFHERD
Ga0209348_100011268	F046991	AGG	MEIAPFPNSVNVPYHGIDQLRDAYRIDQISRNTTKKVAAITRYSELVYEYRSGEIHTSTLKVTRQDYLDLEV
Ga0209348_100011269	F014376	GAG	MLELINPPQYRHCLAMEWMRYNHRQCGYGAQVYVQNTMSRVLGTAHQLDVELLTWDLVKPQAVRTQAVKKKRRL
Ga0209348_100011274	F026153	AGGA	MSEENKVTIDGEEYSFDGLTVETQANIARVNELRREVSALQIQVNERQALLQMYIKAISESVQPVEDAEDEAVVQ