Scaffold Ga0209348_1000110

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1000110
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51901
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (17.24%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008424	Metagenome / Metatranscriptome	333	Y
F015742	Metagenome / Metatranscriptome	252	Y
F044793	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100011035	F044793	N/A	MIINPSSYTSAIPVALNDDINIPGPEVRKSGTTTSLTNDKLVDTNGNFLQTVDANGNITNQGVQVGQIVYNMAAMNTTAWLGPEAAVVKSVDSNTQLTLSANIFPVTGAPSTTQQYKIYDANKLPKGAIIMVGDNQAGNNTKSDIFVKTLDGQDVLVQGVAPGETLDLIVQRVMVGSAATSGAPSTLTTAEKITAFI
Ga0209348_100011056	F008424	N/A	METQVNKLERLLYLTIICAICFFCGVFYTFYKIDQRTWNEDILKARDIETRYMNYPTKRNYKKEDLERIIYGTN
Ga0209348_100011058	F015742	N/A	MDSRKAYEQIKEEIVDKESAYLCTEIERALDRIINYTDPLDETMFRDIKASAIKLLKEWH