Scaffold Ga0209348_1000107

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1000107
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52219
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (64.52%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006662	Metagenome / Metatranscriptome	367	Y
F016980	Metagenome	243	Y
F019152	Metagenome	231	N
F037261	Metagenome	168	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100010733	F016980	AGG	MKYKELLNQLKELTTDQLNAETLVFIRDKEKFVSLKSGLYFVTEFDEYDLDLETDQPYFS
Ga0209348_100010734	F019152	GGAG	MEHTKGILLECNLSEEEINTIIEALSRDFQENDPETLEKEYQLQGKLREIISTFYTKIDAQKFTQMQVKSIRGSTL
Ga0209348_100010740	F006662	AGGAGG	MRTLTAKEYELISKIYNSTDEIEANVSFEFGLQNDLYYSLFHSYEETK
Ga0209348_100010754	F037261	AGG	MATKTMKKWILTDTFDFYSEDANYWNFTDFDEAKKTGENLVESIGAVYLWKATNGNPIKWIKFG