Scaffold Ga0209348

Basic Information
Taxon OID	3300025127 Open in IMG/M
Scaffold ID	Ga0209348_1000070 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025127 Open in IMG/M

Scaffold ID

Ga0209348_1000070 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	61238
Total Scaffold Genes	98 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	63 (64.29%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

61238

Total Scaffold Genes

98 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

63 (64.29%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

18.92

Long. (^o)

-108.7999

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000497	Metagenome	1075	Y
F002594	Metagenome / Metatranscriptome	545	Y
F004220	Metagenome	448	Y
F016666	Metagenome / Metatranscriptome	245	Y
F025768	Metagenome / Metatranscriptome	200	Y
F066824	Metagenome / Metatranscriptome	126	N
F072763	Metagenome / Metatranscriptome	121	N
F084306	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100007056	F072763	AGGAGG	MAGSDLNVAFTSNTSGSQELFGGPTRLKAFIITPTANSGTVVFADGGTNKFTVSTSASAASGPVNIGLPDEGVKFTTNLQATLTNVAGLTAFHA
Ga0209348_100007073	F025768	AGAAG	MLKEFIKKLLGIDKLEFKIRLLERKNYWREKYGVKDIRRS
Ga0209348_100007079	F016666	GGAGG	MSNPFKRVGKQPRLGVKSFSVEDVKAADKRFYDKFPGAVEDAAMLKKAMQNPGDEVVKVDDSRKAEHAKMMKAMKIEVEIS
Ga0209348_100007084	F000497	GAG	MSKKIIENKIALSFREFKDKKILFRLVNNKRDKSKSFLIYENAKYSTNIESAFNNNYRKVDIEYDTTKNNRFKKVNLLIDIPSYLDKNKKDLYQDLINSNKEYIKNNKVDNSVIENIKYFETKINNLK
Ga0209348_100007089	F004220	AGGAG	MVTKDKLDWCYYFKSLVGGTTAPGWIRVCSKDMNEGFSVFTRQTRVKEHYKKIADSGVEFYTCDDDDLDKEYGMYYGNLDFDPLMVMESHSGHTKMFHKENNQWKQL
Ga0209348_100007092	F002594	GGA	MAKIPTSRLNSAPKEYSEVDFDQLIEDLQDMIKILNSTYPTDINNENERKEWFLSG
Ga0209348_100007093	F084306	GGAGG	MSTALIEKLGQKRNLEAEWASKLLANGSVTIEMVQIQKKINEVAQDIKEDSEKKD
Ga0209348_100007094	F066824	N/A	MIAVFLMLVHFKFWRCGYFAEGLVESENLDAASKALWNEHPGTFRWEDVEGPENENRLTVEEYNEYGSDREVGPEAEPRG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209348_1000070

Overview

Ecosystem & Geography

Associated Families

Sequences