Scaffold Ga0209348_1000062

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1000062
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 65319
• Total Scaffold Genes: 92
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (20.65%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001740	Metagenome / Metatranscriptome	643	Y
F008944	Metagenome / Metatranscriptome	325	Y
F009959	Metagenome / Metatranscriptome	310	Y
F016813	Metagenome / Metatranscriptome	244	Y
F077194	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_100006263	F016813	N/A	MNINKLPQLNNNHEYLIDNSDYSELFERLNYNTEDYLIVYSYIHDIIDVVKELINYNVEFSHHSCHLSDESYLLINYKEENLHI
Ga0209348_100006265	F001740	N/A	MYNINNPSNWSWSKAFDEMAKTVNQAELTQQSINHVLDYPGEANGVFMTLSKSKQDDVYEILNQIL
Ga0209348_100006267	F077194	N/A	MAIKNMKTKIYSNQTLTVLDFGSGEIHQYHDVDYEKYQMELDEFVGVQLGYNLNEVEYMFHTDKTVYNLTLEL
Ga0209348_100006274	F009959	N/A	MTEQEVIWKVCDRIVDTLYNELDYYMFEELGYTETDDKYVEDADKLITKVINELIK
Ga0209348_100006280	F008944	N/A	MKKFNQMESNLICDALQFYVAQVERDILQMEKDGKRSIFAQGFYTQVSKELKDKVKTMTKKQKV