Scaffold Ga0209348_1000035

Overview

Basic Information

• Taxon OID: 3300025127
• Scaffold ID: Ga0209348_1000035
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 117735
• Total Scaffold Genes: 168
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 148 (88.10%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Associated Families: 13

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005547	Metagenome	397	Y
F008590	Metagenome	331	Y
F012507	Metagenome	280	Y
F017285	Metagenome	241	Y
F018286	Metagenome	236	Y
F019158	Metagenome	231	Y
F025414	Metagenome	202	Y
F026439	Metagenome	198	Y
F031249	Metagenome	183	Y
F037480	Metagenome	168	Y
F041168	Metagenome	160	Y
F054844	Metagenome	139	Y
F059942	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209348_1000035119	F041168	AGG	MKQAKVRKHTVGFFRNDAEVPFINLEMFETIEQATGIPHYWRDRNGNVSQFWHSGIIPKGTGVVCQHRERGMKHTFWTVTDPESELIGKMFIIGHTFKDRQEDEFERFEYSNISPTLKYSILAEKPLTK
Ga0209348_1000035127	F018286	N/A	MTMLTTFILVGMVDSFDPYFATVELNTTPASNGGPSIAVMPVSVFPCEIYEGKVFYVVKLHEDQDATIVCQKEVKDDTGRRKAD
Ga0209348_1000035133	F059942	GGAG	LTTTELKVGDLISFKPIDFGLEDWSNPSIVMHEYEPPNEGLWSIWCDGVFCVIDDANYEILHLTVS
Ga0209348_1000035135	F005547	AGG	MMKVWVMQGSYEGEVFSSVHLTQKGCALACIADVLEFLGVDDNETALGVMNDVYSYTETDGEQTEAFEWDQEKMKSMTSKELWKIFSDWTEISWDRMSDRSYYIDAQPMEIQA
Ga0209348_1000035144	F031249	AGGAG	MTKVGDLVRVSTKHNGDKLGVVVKIDKDGVHIKAQNHPRDILALHQDVKVLVSA
Ga0209348_1000035152	F054844	GGAGG	MRLETGTLVSWRGSVGLVMGACKKRWAKDDDVWVKWTDEPKLKIESSRFLEVLNASR
Ga0209348_1000035153	F037480	GGAGG	MQVGDLVTFPGAPVPATGIILRTQPDGIYRGDHIKRVKVYWIEDAEVSWEPIKWLELVNACR
Ga0209348_1000035155	F017285	AGGAG	MSWSGTVTCSYCYKQGHNRRKCPELTEAIERQYIGHTLNAKESREKGKINDAEWYESRAELKRQEYMKRTKIDLATGEKVSNKAAKAARMKKVQCGYCGKRGHTRRTCPAVKIDKQVFVEETRRMRIAALKTARQTGIGLGSMLPIRSPGYENGEWRRDILTLRYVKSIEWDSCHANRPALTVKHVDARKLGSPDQSRYTSKDQIEKLVQANDTALRYADAAGQDLPPSSLIPTLDPPKGWLQPTEQSLALVITHAFPTKGNKHATQRGYDYAYPSGMIKEIIKDLGLTEHFDHINWS
Ga0209348_1000035159	F012507	N/A	MSVWTDKLSVGDLLYSVDGKPAIVLEKVESARAKYGDIANKRWRFRLHIDGEQGWLDEVRLRTQYTLP
Ga0209348_1000035161	F019158	N/A	MKMTLVIDTNDREGINDALKMVRIMHEKYAGNVTYHKESFGKIEFIKLLRKFMRESVAHLKDEDDGQVKDVNDLSNLRNAKRFADRIFAGER
Ga0209348_1000035162	F008590	AGG	MKTGDLVTYWYQLSRWQKGLSVHVGLVIETGKFTGNRDVKVLWTNDPEPQTECTQHLALVDDISLTT
Ga0209348_1000035165	F025414	N/A	MQVGSLVREVMDGNVGIIVAWESDGWLVNFPQFNMVFHMLPKLLEVVE
Ga0209348_1000035166	F026439	AGGAG	MASQLDSVILWSDAVEQFTEMILPMIEVSEQRLGHVDIPARSEAWSNYADQLHAEEVISDWQVENWEHPPCCD