Scaffold Ga0209644_1171009

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1171009
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 517
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001487	Metagenome	686	Y
F005131	Metagenome	411	Y
F042930	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_11710091	F001487	AGG	MKKFTIEVSHATTAQLSTIALELKIMSNGWTKHGPRIT
Ga0209644_11710092	F005131	AGGA	MINIKKQLTRQVKRSRPALAAEIKDMPMKDFRALWFVVQQALKVKKRNRLN
Ga0209644_11710093	F042930	N/A	MGHILDKTTVKRILQLHQLQGLSPQIIGQRFGFNTARIYNIIRRQALQSPKLQAPSPRRATIKKDNKL