NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209644_1054327

Scaffold Ga0209644_1054327


Overview

Basic Information
Taxon OID3300025125 Open in IMG/M
Scaffold IDGa0209644_1054327 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)919
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023875Metagenome208N
F048555Metagenome148N
F049935Metagenome / Metatranscriptome146N

Sequences

Protein IDFamilyRBSSequence
Ga0209644_10543272F049935N/AVNDIIVNMQTDIDFEFWDAQIKHFISIIKSDSASRKNKKIAKTHLIEIQTRLKRDVRELNIYIKELETQL
Ga0209644_10543273F048555N/AMKSVTITVGDYDLEIIEQIFENEKKFKPNDPRDELMIELMRQVKDNPKVDLGDDEAAEYKKAKTKFSKNLGGDGKPIVKRPAVQL
Ga0209644_10543274F023875N/AHSLFWIIILFASLIQFFAYANGLRVQLERQFLKDYNETVKKLLEEQQQEEYNQIRNN

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