Scaffold Ga0209644_1053987

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1053987
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 921
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM23-C198 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003481	Metagenome	484	Y
F022524	Metagenome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10539872	F003481	N/A	MDDIQEELRLAREELARLKPTEDKSDKIQMTSGDIVRLVIAAPVVFVWLFLGSRIIISATTSTAVLEHIEPLLLALSILTIPVTAILSSLFKVDGNGK
Ga0209644_10539873	F022524	GGA	MTLFEKICGMVGDRRLPSPKMPAFRLFRVGFANKHVTTVVVLSIVVSGLAVAVGLYFAVKDVVSSTYNWPEPAEYQVTGAGLQTMGKKNENYSDGTESQ