Scaffold Ga0209644_1048608

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1048608
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 968
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000319	Metagenome / Metatranscriptome	1307	Y
F053568	Metagenome / Metatranscriptome	141	N
F089040	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10486082	F053568	AGCAGG	MTIKNTHNMEDGQTFIIKYTKLDGEEVERNAKFILGKCGEYISKQGNKLFTYFDVDQSNHMGGDQYRSARDSWEIK
Ga0209644_10486083	F089040	GGAG	MEKQKLEIIKKVMMLDTRTEVQNVLECVSSSISRECDQDDKDEQEFKQWKENQKTKEMPF
Ga0209644_10486084	F000319	N/A	MFKDLTLIILGVTISYAYFYWQQYKDKKEIKKQERLNEIKTK