Scaffold Ga0209644_1044900

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1044900
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1004
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022755	Metagenome	213	N
F028313	Metagenome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10449001	F022755	N/A	VVTLNGTTAQTKKGFRIPDQTAHITFSGTDYDGAEIWVKLNVSFAHYIALREAAEGDDQAKMAELFGSEVLMEWNLEDASGSPVPANGAGMLQIPLSLAMLIVQHWIEAVSAVPVPLEPPSGDLSTLAAASTATGE
Ga0209644_10449002	F028313	N/A	MISKPWELEEAELIDGLCQRYSCLPSQLMAEDVTLLRMVAIVMEGQPESDG