Scaffold Ga0209644_1040023

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1040023
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1059
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005547	Metagenome	397	Y
F057769	Metagenome / Metatranscriptome	136	Y
F067640	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10400231	F067640	AGGAG	MIEVGSLLMMKMTGTTWLALDEIAETVLVVNQKTNRTMWANKSAFEVIG
Ga0209644_10400232	F057769	GAGG	VTIEVGSIVESIGFVRGYNKSHHGLVISLMADGKIARVFWMATKQSGFCSIKDLKVIT
Ga0209644_10400233	F005547	GAG	MQGSYEGEMFSSVHLTQKGCALACIADIVEFHGIDDDETALSVMGDSYAFTDDEKKVKEATEPIEWDQEKLKEMTSEQLWNIFAEWSEISWDRMADRSYNLDANSVEIQA