Scaffold Ga0209644_1024935

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1024935
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1312
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007532	Metagenome / Metatranscriptome	349	Y
F009538	Metagenome	316	Y
F085809	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10249351	F009538	N/A	ATKQQPGFSNNQDGWQIVRNGINFFRQYFAKEYMVLLD
Ga0209644_10249352	F007532	N/A	LTDKNKAILDYVIRWLDSNIDEPPPEGVQEDSANLKEKIELALDPGNTAKDIEDGNF
Ga0209644_10249353	F085809	AGGA	MFKTIKWNTGSAAERFRLKNKKKKKINKSASSQAGGPAPDESGLKQA