Scaffold Ga0209644_1020692

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209644_1020692

Scaffold Ga0209644_1020692

Overview

Basic Information
Taxon OID	3300025125 Open in IMG/M
Scaffold ID	Ga0209644_1020692 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1428
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-108.7999	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040140	Metagenome	162	N
F068933	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10206921	F068933	GAG	MGKLDQLKKLHRELLMPKALPGMQGTIGRPSDLIPVHAAGQLKGYWKNVKHKPATGFQVSKKNKFKD
Ga0209644_10206922	F040140	GGA	MLECKLSMPKFGKKFEDTGYDGSHHWKVLHDEVNKIECDYCKEKGVKLMRGLHDSVNLHLGKKALHPKDLDFALKHIVWSKKQLEPGLKCELC

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