Scaffold Ga0209644_1020335

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1020335
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1439
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015347	Metagenome / Metatranscriptome	255	Y
F020384	Metagenome / Metatranscriptome	224	N
F024807	Metagenome	204	N
F029468	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10203352	F029468	N/A	MKIRLKEQAEYEFDKDDVEEKQLKMNVAFKDFLEQFIDCEGDVFYSTAMMAQNALFQYQSAVDNTKATHVGPEWDHDKGIVGKWRYPHLRKGND
Ga0209644_10203353	F024807	GAG	MTKRTIPFNLVYHDKDQQLTLALHDNPVTLTRDEVDALIFHLDSFLLDMDKERKPKPSAEGADTHAEAHGEMLMAQYDDDPNPYHGDYSED
Ga0209644_10203354	F020384	N/A	MHHKRIHSYQKSLQKLRNIVSETLRSSGQGRQIEFDNQMRRAIRHIQIIKRNVPSGEKGDLAMVETYRLYDRLQRLSEYPTYFVDNTRKNPGRVASDRGRDYTNARPASVRWDVAAMMAVPMGGPDRNWWRPPPRPLPVKHYTREELELEYPAFTVSKKRKDDA
Ga0209644_10203355	F015347	N/A	MMLDSASEECKQMHMDTKEDAMHPDMDTVYSSAQEMRRFADRLNHWADALMVECRKMEHHQYMI