Scaffold Ga0209644_1013674

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1013674
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1717
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011494	Metagenome / Metatranscriptome	290	Y
F042376	Metagenome / Metatranscriptome	158	N
F047110	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10136742	F042376	N/A	MRKLINKWFRSEVKTYQGAMLRYFYTPVIGFALVLAIVCGFVIGFDEVFRYWRVAALNF
Ga0209644_10136743	F047110	N/A	MKNNKMKTVVSINWKIRDLIREKLSFEKWHLDIFDFPASKKVLNKIKNTERELKQMKKDVFLAAMDEAAA
Ga0209644_10136744	F011494	AGGA	VNEEGVVEEFVQLVGDQDHAALNDAIELAGRAGEDVVEHFADGSRVVVWELAGEEPWEGEDRFADGDALASAGFGTDEDYGCFDAGDEW