Scaffold Ga0209644_1011484

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1011484
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1849
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004179	Metagenome	449	Y
F026025	Metagenome / Metatranscriptome	199	Y
F101317	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10114842	F026025	GAGG	MLFKRGDKFTLVVKNKTHNGNPNKFTHLRYGIFDKDSKFLVSKNKIVFFDTVSKGWRHMKLTNIFAITNITRLDEEQEQQTPTDTCKSKTCENSLIGWTSKSDPRYCMDCV
Ga0209644_10114843	F101317	GGA	MSEKNICQNPKCCDRDSNDRWNKKIEKFQSRKAYFKPKKHKDLYQYFCTTYCTHSWLDDNLESIIDHRGTWEKILEKKIRQ
Ga0209644_10114844	F004179	AGGAG	MNKEIQVEMRNVFGVDRIYPICHIANALIKLKFPQKTFSKNDLNVFKSLGLIVKWKAGSI