Scaffold Ga0209644_1010817

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1010817
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1899
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004769	Metagenome / Metatranscriptome	424	Y
F005219	Metagenome / Metatranscriptome	408	Y
F072748	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10108172	F004769	GAGG	MSAPDKHPTRVQVEVDGFTWRIYGGKAGLHWHCHLVELVGPLPLDGPVTQPLRDKIRSALAKALAVPESEIARIPADLILA
Ga0209644_10108173	F072748	AGGAGG	MTVYDVGDHIRIDGRCGCGELVKPAKGGVQALALRESSACWHGPRTRVVRVFASGDYLLENGGGYVRLARPDEVCR
Ga0209644_10108174	F005219	GGAGG	MTSGEKQPIRPILSAIRRTCPECGGEMSVELLRPDPHDTPVLFLVCPCGYWEAAPADIEASSANHPRMPGF