Scaffold Ga0209644_1008290

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1008290
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2133
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003410	Metagenome / Metatranscriptome	488	Y
F011590	Metagenome / Metatranscriptome	289	Y
F014983	Metagenome / Metatranscriptome	258	Y
F020715	Metagenome	222	Y
F044543	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10082901	F020715	N/A	MAKSRNPIAQILKYFTPKKFKDKTKYNRKRDGKIWKRYFWKES
Ga0209644_10082904	F044543	N/A	MSRKITLDIKGGSSKQYTTLILELNIIAKSWSKFGVNISLPGQERIIKWGNRKHKEEMPAETSN
Ga0209644_10082906	F011590	GGAGG	MTYKETCSLCKGNGYITIVVGGKDEIKQCWLCESKGEKEYSQVEVDDLIYKTYYKK
Ga0209644_10082907	F014983	N/A	MKEEVLTNQKETDRAIKAAVDQANKVKKSTTHCAVCGCTPKADEWSARVKNCCFDCA
Ga0209644_10082908	F003410	N/A	MKILMVLATGAIITFQADERTNPDCFTKGYEIMKNIATYQGPEEKGKDQGWFLKDSNIQVGGWYCQ