NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209644_1008290

Scaffold Ga0209644_1008290


Overview

Basic Information
Taxon OID3300025125 Open in IMG/M
Scaffold IDGa0209644_1008290 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2133
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003410Metagenome / Metatranscriptome488Y
F011590Metagenome / Metatranscriptome289Y
F014983Metagenome / Metatranscriptome258Y
F020715Metagenome222Y
F044543Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0209644_10082901F020715N/AMAKSRNPIAQILKYFTPKKFKDKTKYNRKRDGKIWKRYFWKES
Ga0209644_10082904F044543N/AMSRKITLDIKGGSSKQYTTLILELNIIAKSWSKFGVNISLPGQERIIKWGNRKHKEEMPAETSN
Ga0209644_10082906F011590GGAGGMTYKETCSLCKGNGYITIVVGGKDEIKQCWLCESKGEKEYSQVEVDDLIYKTYYKK
Ga0209644_10082907F014983N/AMKEEVLTNQKETDRAIKAAVDQANKVKKSTTHCAVCGCTPKADEWSARVKNCCFDCA
Ga0209644_10082908F003410N/AMKILMVLATGAIITFQADERTNPDCFTKGYEIMKNIATYQGPEEKGKDQGWFLKDSNIQVGGWYCQ

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