Basic Information | |
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Taxon OID | 3300025125 Open in IMG/M |
Scaffold ID | Ga0209644_1008290 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2133 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (37.50%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 18.92 | Long. (o) | -108.7999 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003410 | Metagenome / Metatranscriptome | 488 | Y |
F011590 | Metagenome / Metatranscriptome | 289 | Y |
F014983 | Metagenome / Metatranscriptome | 258 | Y |
F020715 | Metagenome | 222 | Y |
F044543 | Metagenome / Metatranscriptome | 154 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209644_10082901 | F020715 | N/A | MAKSRNPIAQILKYFTPKKFKDKTKYNRKRDGKIWKRYFWKES |
Ga0209644_10082904 | F044543 | N/A | MSRKITLDIKGGSSKQYTTLILELNIIAKSWSKFGVNISLPGQERIIKWGNRKHKEEMPAETSN |
Ga0209644_10082906 | F011590 | GGAGG | MTYKETCSLCKGNGYITIVVGGKDEIKQCWLCESKGEKEYSQVEVDDLIYKTYYKK |
Ga0209644_10082907 | F014983 | N/A | MKEEVLTNQKETDRAIKAAVDQANKVKKSTTHCAVCGCTPKADEWSARVKNCCFDCA |
Ga0209644_10082908 | F003410 | N/A | MKILMVLATGAIITFQADERTNPDCFTKGYEIMKNIATYQGPEEKGKDQGWFLKDSNIQVGGWYCQ |
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