Scaffold Ga0209644_1008191

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1008191
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2144
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003270	Metagenome	496	Y
F004794	Metagenome / Metatranscriptome	423	Y
F026289	Metagenome	198	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10081911	F004794	GGAG	MSGAWDIATSTSIGTGTSKTQINGGANVTKPTQATSLVEVVPYISSSGAMTAGESLAVTLELDSFSIDLLPKRIIVPPIQSGLGTTISQVNPLLEAYECQTGLQEGATSQFRIFGTNQVAPTVATNLA
Ga0209644_10081912	F003270	N/A	MAKKRRRRKSKSNKHKSIKSMARTWANRLASPVAFWSQLSEKDYQVLNASSQYQSADYLTKLKVASNILTGSLTGRVLFSDQYNPSPNGQPRINPAGVINKWTGIGIAGKIYSIVGKQMGLPESATIGRIGTKIIYGGAVGGFFDPPTPSGRVTTYAVTPNVMVQNRATTKRRNEQFQRNLGYVPPDSFDYSTGSAFRR
Ga0209644_10081914	F026289	GGTGG	MSLKEEKKLNKNQDEAFIDTLVEMLAQPHHDLAWNEKFKAVVRKHFDI