NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209644_1006891

Scaffold Ga0209644_1006891


Overview

Basic Information
Taxon OID3300025125 Open in IMG/M
Scaffold IDGa0209644_1006891 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2308
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002100Metagenome593Y
F003270Metagenome496Y
F008596Metagenome331N
F054091Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0209644_10068911F054091AGGAGMIIEEIPYFVEFIVLGIVLGFGYGFTKLFLNHAKDKSRVKRSERKAKEANSVE
Ga0209644_10068912F002100AGGAGLSQIPRDSFRPALIKPTYNVGDYGHDVIIPLNCLTGSGTTTLTPSTATFVQVLEDGRVPVDEVNQFITDSDKMQLVHAGNDTDFDTTFEYLPDMSFQAYKASFSVAVAMKVSAYTSGNFAISSVQLTMKVIGGGEGDQVIVDKIVNPGMSNMTSATEQVAILNVDTKTSAKVPDKPLSIQVKVDTTSGTGTYQCGIVPLFCYFGSAVPKTWTTSSVIVHAHADLAHAFPIFRDEDNMNMLDRSGIGL
Ga0209644_10068913F008596GGAGMSGAWDIATATSLLTGVAKVQINGGNNLTKPTQAVNLVETVPYTVSSGAYTAGESIALTAYLDSFSVDLLPKRIIVPPVQAGLGTHINIVAPLLEAYECNTALQEGATSQFIVSGQAQVANTVAPLMAMALHYSTTPPNRPEHFYHKPDNESSFTTATTNSGNDFTINDGMWLEDMYVSVFAGTPTVSQSISGYGTFSSNDFGNSLPLKVPMQPGCAGLAGTMTPGNLQLASYHNTHMPMKTSCKISTAFTNDITQSAATRFIMGVGYTKQG
Ga0209644_10068914F003270N/ASSKKKNGSKSIKSMLRQVVNKGAAPLAFWQQLSEKDYQVLNADGNYRALDYLGKLKVAANILTGSLTGRVAFSDQYNPSPSGQPRINPAGIINKWTGIGVAAKLYGKIGKSMKLPEAATIDRVGNKVIFGGAIGGFFDPPGNPGGYVSTANVTPNVMVQNRAQTDRAYAVAQRNRGFVPSGGFDSSTGSAFR

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