Scaffold Ga0209644_1006654

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1006654
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2342
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000904	Metagenome / Metatranscriptome	843	Y
F001081	Metagenome / Metatranscriptome	784	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10066542	F001081	AGGAG	MDKELMIPIKHTKICDNCHGNGYLNVVDNQNLTQVKQCWVCESEGEIKNYDQVEVDDFIYDYYFNKRLQ
Ga0209644_10066546	F000904	AGGAG	MDDHTKIYEEFFEHAMHLLNDHQKSPEMVAGTMMAIAQRIYRTQLSDEEYREMMEVVKDAPVKPYNIKKVRLN