Scaffold Ga0209644_1006601

Overview

Basic Information

• Taxon OID: 3300025125
• Scaffold ID: Ga0209644_1006601
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2350
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -108.7999

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004179	Metagenome	449	Y
F026025	Metagenome / Metatranscriptome	199	Y
F101317	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209644_10066013	F004179	N/A	MHKEIILQVKNVYGNDLIYPSCHISNALIKLKAGKTFTKNDLNVFKSLGLIIKWKAGQV
Ga0209644_10066016	F101317	AGGA	MSEKNICQNPKCCGNDTKDRWNKKLERYQSRKAYWKPHHSVHYRSAILEYFCTTSCAYSWLDDNLERIVDHRGTWEKILEKKIRA
Ga0209644_10066017	F026025	AGG	MLFKRGDKFTLVVKNKTHNGNPNKYTMLRYGVFDKDSKFLVSKNKIVFFDTTAKEYRHMKLTNIFAITNITRLDEEQENQTPTSVCRSKTCDNDLVGGWVSKFDARYCQDCL