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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025125 Open in IMG/M |
| Scaffold ID | Ga0209644_1006027 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2443 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 18.92 | Long. (o) | -108.7999 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002100 | Metagenome | 593 | Y |
| F002150 | Metagenome | 589 | Y |
| F008596 | Metagenome | 331 | N |
| F025299 | Metagenome / Metatranscriptome | 202 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209644_10060271 | F002150 | GGAG | MVGVAVPAMLATKAGKKSGQVLQEQFGYNFVDLITKLVLFYVISFLISKYMEAVIYFQGGLSTVAGFFGIKLVQADQLPNQWVSLFVDTDQKTYSSTPTAPGKFNPPGWDKPYDYGTPEHQQAEPHLFPKKDQQFKFWDLINAIAIFYISWEAYKYWEKGGKDFLTLGIFGLLIAVLSVLSFSRFLNRFSLNRFQEENK |
| Ga0209644_10060272 | F025299 | AGGAG | MIVEEIPYFVEFVILGIVLGFGYGFTKLFLNHAKDKSKIKRSERKAKEANSVEDEMDKYLKNLPAITQHLEIELMNLKEKGATPEQCKSLESKLDLARKAQQYEMPIRMLGKPILKKVLTIIDKFGV |
| Ga0209644_10060273 | F002100 | AGGAG | LSQIPRSSFSPALIKPTYNVGDYGHDVIIPLNCISGSTVTLVPSTSTFVQVLEDGSVPVDEVNQFITNSDEMAGVHAGDSTDFDTTWEWLPDMSFNAYKASFSLAVFMNISAYTSGNFAISSVQLTMKVIGGGEGDQVIVDKIINPGMANMTSATSQIAILNVDTKTSAKIPDKPVTIQVKVNTSAGSGTYQCGIVPIFCYLAPAVPKTWTTSSVVVHAHADLAHAFPIFRDEDNMNMLDRSGIGL |
| Ga0209644_10060274 | F008596 | N/A | SQSIALTAYIDSFSVDLLPKRIIVPPIQAGLGTHINIVAPLLEAYECSTGLQEGATSQFIVSGQCQTAQTVAPLMAMALHYSTTPPNRPEHFYHKPDNESTFTTATTNSGDDFTINDGIWLEDMYVSVFAGTPTVSQSISGYGEFSSNDFGNSLPLKVPMQPGACGLAGTMTPGNLQLASYHNTHMPMKTSCKISTSFTNDITQSASTNFVMGVGYTKQG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |