NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209644_1005467

Scaffold Ga0209644_1005467


Overview

Basic Information
Taxon OID3300025125 Open in IMG/M
Scaffold IDGa0209644_1005467 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2540
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000704Metagenome928Y
F000730Metagenome / Metatranscriptome917Y
F001922Metagenome617Y
F002744Metagenome / Metatranscriptome533Y

Sequences

Protein IDFamilyRBSSequence
Ga0209644_10054671F002744N/APICGATVIYDTDGPNDVESYYTRPTNETAAATAANTRTEGGSMTIQGGSEIRSLYTVVSGATATASQHDVGYSEFISPDFNTSMPYRVAVQPTYTGLGSAANAITGGGGIMEYKMPRGKGIPLANNVTITNYYTNRDARTGASNFINFVRFSRT
Ga0209644_10054672F000704AGGTGGMPHLNSEIEPSKIKSVSVYNVGDYGVDNFLPFTDVGLTETAITFSTATLTRDTEDSNQPMDDFPAVYSDTDSGILLNEGNDTAFSQTYSYNPDMTAIIYALHLHFPAAVICSAFTSGTLNVGALHLKITERSTNDRLLYENTFQSGAANLTATGTSLHIFQQDVVETILVRKGNPIDILVELITVTTGTNTRQEGIVNLAPNIKTAVLKRFTPAGIALHLHADLSHADGVYKYTKNRVSTLGQ
Ga0209644_10054673F000730GAGLVNELIPGELIPLVWFSVIAVTVYVFFRVFSSTLKEKFRQTNLSRKKEQNTTNTDGQIDNLIDNAPKILREIDQQIAQQKSSGVTDDQMKGLYDRKKMIELVTSNQDIINLGKPIVKLAVNWVTKFMR
Ga0209644_10054674F001922GAGMVIQKLLLEEGVKRGLKASREYSVSVLGYDFLGLVGRLIVFFLAAFLINAYFQATISGNIWLNSLGSFFGMKFPQSLPQWVTDLFTVGYHNVNFWQIVQIIAIILVIVEYTQYDKKLKLQNEKPNATTTAVFAMLALGLSLITFPTMIQKIKEMRIVNNV
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